Fiji / ImageJ
Fiji is a popular free open-source image processing package based on ImageJ.Load data from OMERO in Fiji :: via URL (only images supported)
For some file formats, opening image via a URL in FIJI is supported (see table).
Required: URL link to data in OMERO (created by means of OpenLink, for example)
Microscope setup | file format | Fiji command |
---|---|---|
DeltaVision | *.dv | File >> Import >> Bio-Formats (Remote) |
Leica LSM SP5 | *.lif | File >> Import >> Bio-Formats (Remote) |
Lattice Light Sheet | *.tif | File >> Import >> URL |
Olympus LSM Fluoview 1000 | *.oib | File >> Import >> URL |
Load data from OMERO in Fiji :: via Fiji plugin
Required: Install Fiji on the local machine with the OMERO.insight-ij plugin (HowTo) or use the prepared central Fiji installation (available at \\omero.cellnanos.uni-osnabrueck.de\tools inside the Biology/CellNanOs).
HowTo: use Fiji User Interface and OMERO